PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_26840-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 301aa    MW: 33395.5 Da    PI: 4.76
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_26840-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.7e-08554145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwq 45
                     +++WT eE+  l  +++++G g+W++I +          R+  ++k++w+
  TRIUR3_26840-P1  5 KQKWTSEEEAALRAGIARYGVGSWRLILKDDDfrsilSCRSNVDLKDKWR 54
                     79**************************9988555555566666666666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.591161IPR017930Myb domain
SuperFamilySSF466893.96E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-12356IPR009057Homeodomain-like
SMARTSM007176.0E-5459IPR001005SANT/Myb domain
PfamPF002498.6E-7545IPR001005SANT/Myb domain
CDDcd116602.61E-18657No hitNo description
SuperFamilySSF467851.09E-12119191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.8E-6120185IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.0E-14121191IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150419.299122190IPR005818Linker histone H1/H5, domain H15
PfamPF005388.9E-8127182IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGARKQKWTS EEEAALRAGI ARYGVGSWRL ILKDDDFRSI LSCRSNVDLK DKWRNINVFF  60
TESGSMDKGR TAMKKNRAAP RRNDHPMANS TVASDVDDEI VDEQPIASMS SELWNVSIPK  120
KSRSRLNNII LESVKNLNEP TGSHSTTIAK YIEEEYWPPS DFDRMLSANL KDLTTSGELI  180
EVNRKYRIAP APGSMYSEGR SPETLLLEDM QREPRKIESD DIKTLTKSQV DAELADMITM  240
TAEEAASAAA RAIAEAEALM AEAEAATREA EAAEADAQAA QAFAEAVRNR HVTELVTALV  300
L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519300.0JF951930.1 Triticum aestivum clone TaMYB47 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982335.11e-116PREDICTED: single myb histone 6
SwissprotC0HIA31e-113SMH6_MAIZE; Single myb histone 6
TrEMBLM7ZHA60.0M7ZHA6_TRIUA; Uncharacterized protein
STRINGMLOC_34636.11e-151(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-54telomere repeat binding factor 1